I assume its a problem is decoding related. Either it has problems with the single clip itself or if different clips have slightly different fps.
I used eyeFrame converter to convert the mobile mp4 footage to DNxHD (dont remember which option in detail). Now all have another format and all have the same fps.
the problem seems not to occur any longer.
So this may be a workaround, but no solution.
Please fix this problem. This would make resolve much better