Larry Sellers wrote: i know apple's limit on the slot is 75w. but it seems unlikely that this card would try to pull from the slot when it has two power connectors going to it.
Did you make sure to wire the connections on the power supply to account for the lack of motherboard connection? For details on what I'm talking about see:
http://aphnetworks.com/tutorials/psu_paperclip_trickIf there's no power actually coming into the card from the external PSU, it forces the card to draw all power from the internal slot. Based on the behavior you describe, I would say that is exactly what is happening.
I've got an external power supply connected to the dual Nvidia cards on my Mac Pro and use a little app called iStat Menus (easy to find on the app store) to monitor how much power those GPUs are drawing from the internal slot. Occaisionally the PSU will not cycle back on when I power up my Mac Pro in the morning and iStat Menus immediately alerts me when that happens because I can see clearly when the GPU is drawing too much power from the internal slot.