richardwetz wrote:Solved it myself, there was a combined clip left in the timeline that caused the trouble (and also some clips at this famous
save for later spot at the end of the timeline

)
Yes, Compound Clips and a few other weird formats can cause the train to come off the tracks.
I had a few cases where missing clips were way off the timeline (out of view on the Edit page), and those were causing Media Management to fail. There's a few "gotcha's" on that list.