Unfortunately that wouldn't work because the final export would still have the colour change.
I did a lot more digging and discovered that the problem had already been highlighted in this post:
viewtopic.php?f=21&t=130628&p=708622&hilit=distortion#p708622I tried this at 578 and 574 and got the same result. With the resolution 576 or below the colour changes, above 576 it it fine.
There are some old posts about importing old DV AVI files being a problem but nothing about the colour change, so I though it must be a recent issue. I uninstalled DR 17 and installed DR 16. Problem solved, it works exactly as it should, so must be an issue with DR 17. The database is obviously not backwards compatible, which means that I can't access anything I did in 17 but at least I have solved the problem and it turns out that I wasn't doing something wrong, which is a bonus!